ANME-2a enrichment diversity

PRJNA578996 · illumina_amplicon · Created 2026-08-18

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1

Data Selected

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Project metadata

Project Title: ANME-2a enrichment diversity
Organism: marine metagenome
Organization: Shanghai Jiao Tong University
SRA Runs: 10
Samples: 10
Data: 2,346,928 reads, 1.15 Gbp
Description: Community composition of ANME-2a enrichment under different pressure

Selected data types

Platform	ILLUMINA
Strategy	AMPLICON
Source	GENOMIC
Runs	10
Data	1.15 Gbp

2

Pipeline Analysis

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Processed with illumina_amplicon on Alliance Canada HPC.

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Assays and primers used

inferred primers

Forward: CCAGCASCYGCGGTAATWCC
Reverse: GGACTACCAGGGTATCTAATCCTGTT
Samples: 6 · primers in 50.0% of reads, median across the assay's samples

inferred primers

Forward: GGACTACCAGGGTATCTAATCCTGTT
Reverse: GGACTACCAGGGTATCTAATCCTGTT
Samples: 2 · primers in 46.2% of reads, median across the assay's samples

inferred primers

Forward: CCAGCASCYGCGGTAATWCC
Reverse: CCAGCASCYGCGGTAATWCC
Samples: 1 · primers in 43.9% of reads, median across the assay's samples

inferred primers

Forward: GGACTACCAGGGTATCTAATCCTGTT
Reverse: CCAGCASCYGCGGTAATWCC
Samples: 1 · primers in 49.1% of reads, median across the assay's samples

1,340 ASVs across the run.

Pipeline info

Container image

illumina-amplicon: 05f23de10d82
Cluster: grex