ANME-2a enrichment diversity

PRJNA578996 · illumina_amplicon · Created 2026-08-19

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1

Data Selected

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Project metadata
Project Title
ANME-2a enrichment diversity
Organism
marine metagenome
Organization
Shanghai Jiao Tong University
SRA Runs
10
Samples
10
Data
2,346,928 reads, 1.15 Gbp
Description
Community composition of ANME-2a enrichment under different pressure
Selected data types
PlatformILLUMINA
StrategyAMPLICON
SourceGENOMIC
Runs10
Data1.15 Gbp
2

Pipeline Analysis

Done

Processed with illumina_amplicon on Alliance Canada HPC.

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Assays and primers used

inferred primers

Forward
GGACTACNVGGGTWTCTAAT
Reverse
GTGYCAGCMGCCGCGGTAA
Samples
6 · primers in 43.7% of reads, median across the assay's samples

eukaryotic 18S rRNA · eukaryotic 18S 565-584

Forward
GGACTACNVGGGTWTCTAAT
Reverse
GTGYCAGCMGCCGCGGTAA
Samples
4 · primers in 47.3% of reads, median across the assay's samples

937 ASVs across the run.

Pipeline info

Container image

illumina-amplicon
9ffda89262b7
Cluster
grex