aquatic metagenome Raw sequence reads

PRJNA413447 · illumina_amplicon · Created 2026-08-18

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Project metadata
Project Title
aquatic metagenome Raw sequence reads
Organism
aquatic metagenome, marine metagenome
Organization
Ocean University of China
SRA Runs
30
Samples
30
Data
1,288,226 reads, 0.72 Gbp
Description
Microbial community of seawater along the water column in Mariana Trench
Selected data types
PlatformILLUMINA
StrategyAMPLICON
SourceMETAGENOMIC
Runs30
Data0.72 Gbp
2

Pipeline Analysis

Done

Processed with illumina_amplicon on Alliance Canada HPC.

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Assays and primers used

inferred primers

Forward
GTGYCAGCMGCCGCGGTAA
Reverse
GGACTACNVGGGTWTCTAAT
Samples
29 · primers in 52.8% of reads, median across the assay's samples

inferred primers

Forward
GGACTACNVGGGTWTCTAAT
Reverse
GTGYCAGCMGCCGCGGTAA
Samples
1 · primers in 50.7% of reads, median across the assay's samples

3,110 ASVs across the run.

Pipeline info

Container image

illumina-amplicon
05f23de10d82
Cluster
grex