Spartina rhizoshpere and phyllospheric microorganisms

PRJNA884545 · illumina_amplicon · Created 2026-08-18

Ready
✓ Data ✓ Pipeline
1

Data Selected

Locked

Your BioProject data has been linked and a pipeline selected.

Project metadata
Project Title
Spartina rhizoshpere and phyllospheric microorganisms
Organism
leaf metagenome + 3 others
Organization
Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences
SRA Runs
48
Samples
48
Data
2,945,856 reads, 1.77 Gbp
Description
Clarify the potential invasion mechanism of Spartina
Selected data types
PlatformILLUMINA
StrategyAMPLICON
SourceMETAGENOMIC
Runs48
Data1.77 Gbp
2

Pipeline Analysis

Done

Processed with illumina_amplicon on Alliance Canada HPC.

Explore Data on microscape.app → Download for offline use
Assays and primers used

inferred primers

Forward
GTGYCAGCMGCCGCGGTAA
Reverse
GTGYCAGCMGCCGCGGTAA
Samples
22 · primers in 49.8% of reads, median across the assay's samples

inferred primers

Forward
GTGYCAGCMGCCGCGGTAA
Reverse
GGACTACCAGGGTATCTAATCCTGTT
Samples
16 · primers in 100.0% of reads, median across the assay's samples

inferred primers

Forward
GTGYCAGCMGCCGCGGTAA
Reverse
GGACTACNVGGGTWTCTAAT
Samples
10 · primers in 100.0% of reads, median across the assay's samples

4,787 ASVs across the run.

Pipeline info

Container image

illumina-amplicon
05f23de10d82
Cluster
grex